MLOC_12100 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.026078500.0394384
LEAShoots from the seedlings (10 cm shoot stage)0.2157670.338270.08701250.151062
INF1Young developing inflorescences (5mm)0.09005780.2199430.1905790.122645
INF2Developing inflorescences (1-1.5 cm)2.71940.1582611.315131.35873
ROORoots from the seedlings (10 cm shoot stage)0.26059400.152370.096688
NODDeveloping tillers at six leaf stage, 3rd internode0.2106020.06462270.08099730.172402
CAR5Developing grain, bracts removed (5 DPA)0.07845220.07285800.070671
CAR15Developing grain, bracts removed (15 DPA)0.0459028000.162251



CDS Structure of MLOC_12100






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12100.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12100.2NoneAvailableAvailablecontig_1562524 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g41960.1 +1 2e-24 100 53/68 (78%) 13108.m04510 protein OsMADS37 - MADS-box family gene with MIKC* type-box, expressed
TAIR PP10 AT4G11880.1 +1 3e-20 89 42/54 (78%) | Symbols: AGL14 | AGAMOUS-like 14 | chr4:7143512-7147108 FORWARD LENGTH=221