MLOC_12089 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains62.106252.673255.769648.4953
LEAShoots from the seedlings (10 cm shoot stage)58.36541.238554.861337.8221
INF1Young developing inflorescences (5mm)44.55749.937949.669635.022
INF2Developing inflorescences (1-1.5 cm)33.140539.481844.992237.3061
ROORoots from the seedlings (10 cm shoot stage)77.811579.966880.91678.1605
NODDeveloping tillers at six leaf stage, 3rd internode80.365348.996643.3997122.602
CAR5Developing grain, bracts removed (5 DPA)32.702238.573835.490630.3378
CAR15Developing grain, bracts removed (15 DPA)17.652818.676518.434337.4134



CDS Structure of MLOC_12089






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12089.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251697.1NoneNoneNoneNone
MLOC_12089.1CUST_1124_PI427708080AvailableAvailablecontig_1562499 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g43824.1 +2 4e-35 125 53/64 (83%) 13104.m04360 protein expressed protein
TAIR PP10 AT1G06515.2 +2 2e-18 79 34/55 (62%) Protein of unknown function (DUF3317) | chr1:1990951-1991968 REVERSE LENGTH=56