MLOC_12086 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.327885.472495.53835.90047
LEAShoots from the seedlings (10 cm shoot stage)5.858894.301534.489144.27614
INF1Young developing inflorescences (5mm)8.586568.853458.212557.38169
INF2Developing inflorescences (1-1.5 cm)8.58157.940819.071959.32497
ROORoots from the seedlings (10 cm shoot stage)10.30249.4502710.384312.02
NODDeveloping tillers at six leaf stage, 3rd internode1.542011.773581.960186.15883
CAR5Developing grain, bracts removed (5 DPA)6.35366.735926.565996.53829
CAR15Developing grain, bracts removed (15 DPA)4.514824.080244.2622610.05



CDS Structure of MLOC_12086






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12086.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359523NoneNoneNoneNone
MLOC_12086.1CUST_1123_PI427708080AvailableAvailablecontig_1562488 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g37640.1 -3 0.0 606 303/390 (78%) 13110.m03418 protein HIT zinc finger domain containing protein, expressed
TAIR PP10 AT5G63830.1 -3 2e-125 377 199/397 (50%) HIT-type Zinc finger family protein | chr5:25543585-25544802 REVERSE LENGTH=405