MLOC_12083 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains30.020420.235520.592820.8907
LEAShoots from the seedlings (10 cm shoot stage)22.17984.5092812.87069.61357
INF1Young developing inflorescences (5mm)99.6815132.718149.184111.502
INF2Developing inflorescences (1-1.5 cm)73.6497106.35590.1518100.53
ROORoots from the seedlings (10 cm shoot stage)15.009718.873624.816818.2253
NODDeveloping tillers at six leaf stage, 3rd internode47.6922198.2513.7288352.221
CAR5Developing grain, bracts removed (5 DPA)59.481869.574962.29861.6289
CAR15Developing grain, bracts removed (15 DPA)1.42970.6645140.9914382.54647



CDS Structure of MLOC_12083






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12083.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249636.1NoneNoneNoneNone
MLOC_12083.2CUST_1122_PI427708080AvailableAvailablecontig_1562484 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g51040.1 -3 1e-132 393 220/264 (83%) 13102.m05799 protein expansin precursor, putative, expressed
TAIR PP10 AT1G69530.2 -3 2e-108 328 170/227 (75%) | Symbols: ATEXPA1, EXP1, AT-EXP1, ATEXP1, ATHEXP ALPHA 1.2, EXPA1 | expansin A1 | chr1:26142034-26143051 FORWARD LENGTH=250