MLOC_12066 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.843118.862278.125259.40195
LEAShoots from the seedlings (10 cm shoot stage)6.718195.380525.273645.51442
INF1Young developing inflorescences (5mm)12.438611.04379.7273810.2068
INF2Developing inflorescences (1-1.5 cm)14.412414.453112.783317.0373
ROORoots from the seedlings (10 cm shoot stage)6.320538.974316.9534812.0855
NODDeveloping tillers at six leaf stage, 3rd internode1.064381.580322.243636.19299
CAR5Developing grain, bracts removed (5 DPA)12.506912.014411.638613.3327
CAR15Developing grain, bracts removed (15 DPA)4.961414.674913.3346211.2453



CDS Structure of MLOC_12066






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12066.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12066.3CUST_8879_PI427708080AvailableAvailablecontig_1562468 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g41090.1 -1 0.0 917 461/517 (89%) 13105.m04355 protein CAMK_CAMK_like_CG18020d.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
TAIR PP10 AT3G10660.1 -1 1e-74 265 163/442 (37%) | Symbols: CPK2, ATCPK2 | calmodulin-domain protein kinase cdpk isoform 2 | chr3:3331599-3334268 REVERSE LENGTH=646