MLOC_12061 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.801910.532510.057510.2152
LEAShoots from the seedlings (10 cm shoot stage)59.801774.0911116.49368.9061
INF1Young developing inflorescences (5mm)11.367412.573913.961910.5985
INF2Developing inflorescences (1-1.5 cm)10.265710.90269.5739811.4329
ROORoots from the seedlings (10 cm shoot stage)3.049233.254163.037733.76511
NODDeveloping tillers at six leaf stage, 3rd internode15.647521.145442.44573.9148
CAR5Developing grain, bracts removed (5 DPA)12.748715.606113.636514.1492
CAR15Developing grain, bracts removed (15 DPA)1.815332.339051.722824.71722



CDS Structure of MLOC_12061






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12061.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354025NoneNoneNoneNone
MLOC_12061.2CUST_1120_PI427708080AvailableAvailablecontig_1562454 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g44400.1 -1 1e-148 432 220/280 (79%) 13108.m04821 protein glutathione S-transferase, N-terminal domain containing protein, expressed
TAIR PP10 AT5G03880.1 -1 5e-130 384 194/280 (69%) Thioredoxin family protein | chr5:1038674-1041453 REVERSE LENGTH=339