MLOC_12056 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.909435.023995.540624.45345
LEAShoots from the seedlings (10 cm shoot stage)8.741019.124699.373497.22154
INF1Young developing inflorescences (5mm)3.854773.792074.547463.16116
INF2Developing inflorescences (1-1.5 cm)7.547795.996385.596796.4932
ROORoots from the seedlings (10 cm shoot stage)1.806094.731415.608014.80207
NODDeveloping tillers at six leaf stage, 3rd internode5.934514.832475.5449815.5724
CAR5Developing grain, bracts removed (5 DPA)2.568653.037573.045722.58132
CAR15Developing grain, bracts removed (15 DPA)0.8334151.082871.189332.06943



CDS Structure of MLOC_12056






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12056.9
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370307NoneNoneNoneNone
MLOC_12056.9CUST_1118_PI427708080AvailableAvailablecontig_1562441 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g34870.2 -2 3e-168 482 250/282 (89%) 13112.m08929 protein mitochondrial carrier protein, putative, expressed
TAIR PP10 AT4G03115.1 -2 1e-115 348 184/293 (63%) Mitochondrial substrate carrier family protein | chr4:1383366-1385485 REVERSE LENGTH=314