MLOC_12052 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.7316290.822690.8121010.899828
LEAShoots from the seedlings (10 cm shoot stage)1.4731.023910.8972961.10302
INF1Young developing inflorescences (5mm)9.020829.068099.564688.44758
INF2Developing inflorescences (1-1.5 cm)31.2731.5935.35838.399
ROORoots from the seedlings (10 cm shoot stage)0.8221211.78530.8088842.33447
NODDeveloping tillers at six leaf stage, 3rd internode5.12198.226066.6037632.3938
CAR5Developing grain, bracts removed (5 DPA)12.611611.239912.435812.9833
CAR15Developing grain, bracts removed (15 DPA)1.618151.819721.455334.0556



CDS Structure of MLOC_12052






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12052.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12052.2CUST_8875_PI427708080AvailableAvailablecontig_1562436 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g32930.1 -3 0.0 926 484/596 (81%) 13109.m03296 protein retrotransposon protein, putative, SINE subclass, expressed
TAIR PP10 AT1G67370.1 -3 0.0 610 326/595 (55%) | Symbols: ASY1, ATASY1 | DNA-binding HORMA family protein | chr1:25239347-25243713 REVERSE LENGTH=596