MLOC_11986 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.6572315.502613.114.3123
LEAShoots from the seedlings (10 cm shoot stage)17.306814.293311.833614.2737
INF1Young developing inflorescences (5mm)26.769823.542323.500322.0945
INF2Developing inflorescences (1-1.5 cm)20.998520.626518.431623.9757
ROORoots from the seedlings (10 cm shoot stage)2.495915.695224.208557.76825
NODDeveloping tillers at six leaf stage, 3rd internode2.485073.501544.6364714.7563
CAR5Developing grain, bracts removed (5 DPA)20.32921.672322.98123.5243
CAR15Developing grain, bracts removed (15 DPA)5.915965.246425.3296213.4107



CDS Structure of MLOC_11986






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11986.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373880CUST_25791_PI427708080NoneNoneNone
MLOC_11986.4CUST_17905_PI427708080AvailableAvailablecontig_1561802 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g36710.1 +1 2e-95 318 188/277 (68%) 13106.m03798 protein transposon protein, putative, CACTA, En/Spm sub-class, expressed
TAIR PP10 AT2G03150.1 +1 3e-106 371 315/956 (33%) | Symbols: emb1579 | ATP/GTP-binding protein family | chr2:952313-959004 FORWARD LENGTH=1340