MLOC_11960 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains113.466107.745118.905127.199
LEAShoots from the seedlings (10 cm shoot stage)5.6614911.50819.158212.0359
INF1Young developing inflorescences (5mm)0.115003000.105396
INF2Developing inflorescences (1-1.5 cm)0.21591900.1527550.211446
ROORoots from the seedlings (10 cm shoot stage)41.440518.979529.690430.3841
NODDeveloping tillers at six leaf stage, 3rd internode31.596414.03592.2268638.4562
CAR5Developing grain, bracts removed (5 DPA)3.409465.96863.633125.23182
CAR15Developing grain, bracts removed (15 DPA)3.442918.139672.4448114.5826



CDS Structure of MLOC_11960






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11960.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371842NoneNoneNoneNone
MLOC_11960.2CUST_1099_PI427708080AvailableAvailablecontig_1562231 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g34910.1 +3 5e-83 257 128/207 (62%) 13110.m03118 protein secretory protein, putative, expressed
TAIR PP10 AT2G15220.1 +3 7e-71 224 107/205 (52%) Plant basic secretory protein (BSP) family protein | chr2:6608689-6609366 FORWARD LENGTH=225