MLOC_11952 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains37.640153.855446.520148.2294
LEAShoots from the seedlings (10 cm shoot stage)21.80341.954411.593787.75414
INF1Young developing inflorescences (5mm)203.463199.292176.783165.086
INF2Developing inflorescences (1-1.5 cm)130.906197.041148.05175.287
ROORoots from the seedlings (10 cm shoot stage)15.669435.001829.824938.9058
NODDeveloping tillers at six leaf stage, 3rd internode0.1580780.296750.08330040.883161
CAR5Developing grain, bracts removed (5 DPA)79.994377.683573.542973.0583
CAR15Developing grain, bracts removed (15 DPA)5.4363.403015.1807210.2981



CDS Structure of MLOC_11952






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11952.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_11952.1CUST_8861_PI427708080AvailableAvailablecontig_1562217 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g12570.1 -1 0.0 1006 513/795 (65%) 13103.m01440 protein expressed protein
TAIR PP10 AT1G69770.1 -1 0.0 744 398/784 (51%) | Symbols: CMT3 | chromomethylase 3 | chr1:26248496-26253519 REVERSE LENGTH=839