MLOC_11950 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.428351.523291.364781.7553
LEAShoots from the seedlings (10 cm shoot stage)16.72227.267929.960326.066
INF1Young developing inflorescences (5mm)0.3796590.4384280.3191720.414555
INF2Developing inflorescences (1-1.5 cm)0.3854010.253880.5457040.496673
ROORoots from the seedlings (10 cm shoot stage)0.1086830.1370690.2278470.19472
NODDeveloping tillers at six leaf stage, 3rd internode5.903639.02797.376436.6619
CAR5Developing grain, bracts removed (5 DPA)3.726745.426273.612576.01257
CAR15Developing grain, bracts removed (15 DPA)0.04448080.2810290.1890030.466399



CDS Structure of MLOC_11950






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11950.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366882NoneNoneNoneNone
MLOC_11950.1CUST_6899_PI427708080AvailableAvailablecontig_1562212 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g11230.1 +3 2e-71 221 119/169 (70%) 13103.m01266 protein expressed protein
TAIR PP10 AT2G03420.1 +3 3e-53 174 81/120 (68%) unknown protein; Has 38 Blast hits to 38 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:1035100-1035937 REVERSE LENGTH=170