MLOC_11949 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.453814.346294.607543.59972
LEAShoots from the seedlings (10 cm shoot stage)6.758056.364176.600234.62063
INF1Young developing inflorescences (5mm)7.224078.003048.764175.2864
INF2Developing inflorescences (1-1.5 cm)8.866249.30728.634337.96806
ROORoots from the seedlings (10 cm shoot stage)3.234283.798293.705053.47157
NODDeveloping tillers at six leaf stage, 3rd internode3.269884.600493.9851112.1351
CAR5Developing grain, bracts removed (5 DPA)5.26085.016656.133674.05235
CAR15Developing grain, bracts removed (15 DPA)2.564241.923292.804554.24514



CDS Structure of MLOC_11949






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11949.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_11949.3CUST_11349_PI427708083AvailableAvailablecontig_1562212 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g11240.1 +2 4e-60 228 122/188 (65%) 13103.m01267 protein nucleotidyltransferase, putative, expressed
TAIR PP10 AT2G03420.1 -2 7e-26 108 58/110 (53%) unknown protein; Has 38 Blast hits to 38 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:1035100-1035937 REVERSE LENGTH=170