MLOC_11927 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains35.825932.570735.328736.3201
LEAShoots from the seedlings (10 cm shoot stage)10.61435.690185.070156.17255
INF1Young developing inflorescences (5mm)9.461115.445297.625496.69558
INF2Developing inflorescences (1-1.5 cm)12.312610.413411.781713.2
ROORoots from the seedlings (10 cm shoot stage)25.29220.816425.066227.1811
NODDeveloping tillers at six leaf stage, 3rd internode17.272415.506815.196451.1306
CAR5Developing grain, bracts removed (5 DPA)11.14911.04911.811.6906
CAR15Developing grain, bracts removed (15 DPA)4.060473.61344.362639.93834



CDS Structure of MLOC_11927






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11927.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372638NoneNoneNoneNone
MLOC_11927.1CUST_1093_PI427708080AvailableAvailablecontig_1562180 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g43650.2 -1 0.0 605 316/374 (84%) 13104.m04339 protein L-allo-threonine aldolase, putative, expressed
TAIR PP10 AT1G08630.4 -1 1e-153 449 229/351 (65%) | Symbols: THA1 | threonine aldolase 1 | chr1:2743948-2745685 REVERSE LENGTH=358