MLOC_11893 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6757160.7069390.8074320.77336
LEAShoots from the seedlings (10 cm shoot stage)20.339432.487532.81325.1237
INF1Young developing inflorescences (5mm)0.4333150.6689970.4898360.504675
INF2Developing inflorescences (1-1.5 cm)0.5329940.5593730.6109290.671181
ROORoots from the seedlings (10 cm shoot stage)0.2700420.3031120.5667490.413573
NODDeveloping tillers at six leaf stage, 3rd internode0.6235490.4650220.5409881.55802
CAR5Developing grain, bracts removed (5 DPA)2.039932.663182.717492.71674
CAR15Developing grain, bracts removed (15 DPA)0.1921680.12660.119240.389739



CDS Structure of MLOC_11893






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11893.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370637NoneNoneNoneNone
MLOC_11893.5CUST_1088_PI427708080AvailableAvailablecontig_1562091 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g08460.1 +3 2e-135 414 236/391 (60%) 13101.m00885 protein TMS membrane protein/tumour differentially expressed protein, putative, expressed
TAIR PP10 AT3G24460.1 +3 5e-163 482 229/370 (62%) Serinc-domain containing serine and sphingolipid biosynthesis protein | chr3:8886160-8889717 REVERSE LENGTH=409