MLOC_11892 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.215514.201714.131514.6308
LEAShoots from the seedlings (10 cm shoot stage)9.598241.320351.787793.78498
INF1Young developing inflorescences (5mm)24.160423.754723.604720.9142
INF2Developing inflorescences (1-1.5 cm)23.148328.972128.409330.8741
ROORoots from the seedlings (10 cm shoot stage)5.527078.374788.4352510.2097
NODDeveloping tillers at six leaf stage, 3rd internode5.316484.498433.7235115.3422
CAR5Developing grain, bracts removed (5 DPA)9.89229.744768.106519.55389
CAR15Developing grain, bracts removed (15 DPA)0.5084910.2854890.5406871.05991



CDS Structure of MLOC_11892






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11892.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365989NoneNoneNoneNone
MLOC_11892.1CUST_1087_PI427708080AvailableAvailablecontig_1562087 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g32350.1 +3 0.0 658 382/514 (74%) 13105.m03329 protein zinc finger, C3HC4 type domain containing protein, expressed
TAIR PP10 AT5G45290.1 +3 7e-82 275 175/297 (59%) RING/U-box superfamily protein | chr5:18350011-18352092 REVERSE LENGTH=545