MLOC_11890 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains176.396122.166138.563155.177
LEAShoots from the seedlings (10 cm shoot stage)227.673158.463211.051180.907
INF1Young developing inflorescences (5mm)61.210856.827691.051267.0456
INF2Developing inflorescences (1-1.5 cm)28.930633.966437.507740.9989
ROORoots from the seedlings (10 cm shoot stage)742.781446.837360.562617.705
NODDeveloping tillers at six leaf stage, 3rd internode376.035380.455100.7961062.4
CAR5Developing grain, bracts removed (5 DPA)119.032117.875114.563130.919
CAR15Developing grain, bracts removed (15 DPA)12.956318.347913.499240.7602



CDS Structure of MLOC_11890






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11890.6
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370710NoneNoneNoneNone
MLOC_11890.6CUST_1086_PI427708080AvailableAvailablecontig_1562081 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g50240.1 +3 0.0 692 321/344 (93%) 13102.m05701 protein glutamine synthetase, catalytic domain containing protein, expressed
TAIR PP10 AT5G37600.1 +3 0.0 656 298/344 (87%) | Symbols: ATGSR1, GLN1;1, GSR 1, ATGLN1;1 | glutamine synthase clone R1 | chr5:14933574-14935656 REVERSE LENGTH=356