MLOC_11875 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains38.439447.156443.583938.7281
LEAShoots from the seedlings (10 cm shoot stage)37.593616.874925.092821.7448
INF1Young developing inflorescences (5mm)17.472714.38715.677511.5111
INF2Developing inflorescences (1-1.5 cm)15.476818.158919.420516.56
ROORoots from the seedlings (10 cm shoot stage)28.079531.036930.438632.4943
NODDeveloping tillers at six leaf stage, 3rd internode32.32729.205320.09884.6101
CAR5Developing grain, bracts removed (5 DPA)32.412935.318335.992528.5859
CAR15Developing grain, bracts removed (15 DPA)6.481247.758437.416713.3232



CDS Structure of MLOC_11875






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11875.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366789NoneNoneNoneNone
MLOC_11875.3CUST_1079_PI427708080AvailableAvailablecontig_1562038 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g67870.1 +2 0.0 852 426/519 (82%) 13101.m07381 protein expressed protein
TAIR PP10 AT2G19880.2 +2 0.0 733 367/523 (70%) Nucleotide-diphospho-sugar transferases superfamily protein | chr2:8581578-8585118 FORWARD LENGTH=520