MLOC_11874 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.728552.94563.315613.18768
LEAShoots from the seedlings (10 cm shoot stage)3.712142.372593.075882.7194
INF1Young developing inflorescences (5mm)6.535145.992095.095455.36174
INF2Developing inflorescences (1-1.5 cm)6.203426.695196.4797.62583
ROORoots from the seedlings (10 cm shoot stage)2.760842.507541.760043.21402
NODDeveloping tillers at six leaf stage, 3rd internode0.9298271.406092.573055.41167
CAR5Developing grain, bracts removed (5 DPA)3.307233.482943.427493.60439
CAR15Developing grain, bracts removed (15 DPA)0.4931490.5025490.5206111.24509



CDS Structure of MLOC_11874






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11874.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357209NoneNoneNoneNone
MLOC_11874.1CUST_1078_PI427708080AvailableAvailablecontig_1562036 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g01420.1 -2 0.0 580 320/558 (57%) 13108.m00062 protein PHD-finger domain containing protein, putative, expressed
TAIR PP10 AT1G77250.1 -2 9e-56 203 122/410 (30%) RING/FYVE/PHD-type zinc finger family protein | chr1:29020444-29022938 REVERSE LENGTH=522