MLOC_1187 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5065491.830821.116491.338
LEAShoots from the seedlings (10 cm shoot stage)1.082151.045460.6556980.887388
INF1Young developing inflorescences (5mm)1.51042.672432.600641.89842
INF2Developing inflorescences (1-1.5 cm)3.826582.759452.976013.47925
ROORoots from the seedlings (10 cm shoot stage)0.2788870.45350500.594593
NODDeveloping tillers at six leaf stage, 3rd internode0.8137461.091290.8431293.6081
CAR5Developing grain, bracts removed (5 DPA)1.480481.055131.616721.25679
CAR15Developing grain, bracts removed (15 DPA)0.15142800.2270380.366845



CDS Structure of MLOC_1187






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_1187.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_1187.1CUST_1822_PI427708083AvailableAvailablecontig_110239 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g07950.1 -3 3e-27 109 62/144 (43%) 13108.m00818 protein NB-ARC domain containing protein, expressed
TAIR PP10 AT3G29763.1 -3 6e-20 86 53/143 (37%) General transcription factor 2-related zinc finger protein | chr3:11593924-11595441 REVERSE LENGTH=505