MLOC_11845 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.265919.987117.672713.1991
LEAShoots from the seedlings (10 cm shoot stage)9.7857810.83285.674675.93334
INF1Young developing inflorescences (5mm)27.303229.831528.793318.3767
INF2Developing inflorescences (1-1.5 cm)28.135424.379720.33821.434
ROORoots from the seedlings (10 cm shoot stage)13.038518.251922.252315.8784
NODDeveloping tillers at six leaf stage, 3rd internode10.45413.758526.7774411.4397
CAR5Developing grain, bracts removed (5 DPA)7.805899.561587.897016.08797
CAR15Developing grain, bracts removed (15 DPA)4.284143.6883.399397.12617



CDS Structure of MLOC_11845






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11845.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_11845.1CUST_11345_PI427708083AvailableAvailablecontig_1561932 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g31350.1 -3 7e-14 72 34/36 (94%) 13112.m03191 protein SSXT protein, putative, expressed
TAIR PP10 AT4G00850.1 -3 2e-12 67 31/35 (89%) | Symbols: GIF3 | GRF1-interacting factor 3 | chr4:357675-358928 FORWARD LENGTH=223