MLOC_1184 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.120318.655415.516312.3246
LEAShoots from the seedlings (10 cm shoot stage)15.711613.122411.38219.45472
INF1Young developing inflorescences (5mm)19.039320.65322.991715.7457
INF2Developing inflorescences (1-1.5 cm)15.262414.183414.65314.1353
ROORoots from the seedlings (10 cm shoot stage)4.2060710.054216.57428.9397
NODDeveloping tillers at six leaf stage, 3rd internode14.39032.776036.688677.87135
CAR5Developing grain, bracts removed (5 DPA)8.489828.820947.400776.93369
CAR15Developing grain, bracts removed (15 DPA)7.871326.250428.0711916.4318



CDS Structure of MLOC_1184






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_1184.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_1184.1CUST_11344_PI427708083AvailableAvailablecontig_110206 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g19220.1 -3 3e-18 81 39/47 (83%) 13111.m01946 protein mitosis protein dim1, putative, expressed
TAIR PP10 AT3G24730.1 -3 5e-11 59 27/45 (60%) mRNA splicing factor, thioredoxin-like U5 snRNP | chr3:9030152-9030894 REVERSE LENGTH=159