MLOC_11755 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.117922.320318.871817.3086
LEAShoots from the seedlings (10 cm shoot stage)16.122813.777413.196711.8362
INF1Young developing inflorescences (5mm)44.4642.513841.931133.3772
INF2Developing inflorescences (1-1.5 cm)56.415350.513544.239652.0895
ROORoots from the seedlings (10 cm shoot stage)6.8570918.293812.929917.9081
NODDeveloping tillers at six leaf stage, 3rd internode6.833158.2053912.388128.0408
CAR5Developing grain, bracts removed (5 DPA)20.314618.749920.620917.6635
CAR15Developing grain, bracts removed (15 DPA)18.385818.222614.014736.6114



CDS Structure of MLOC_11755






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11755.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_11755.1CUST_8839_PI427708080AvailableAvailablecontig_1561766 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g56190.1 -1 0.0 1781 936/1181 (79%) 13101.m05937 protein HVT1, putative, expressed
TAIR PP10 AT2G30800.1 -1 0.0 1212 634/1105 (57%) | Symbols: HVT1, ATVT-1 | helicase in vascular tissue and tapetum | chr2:13120585-13126635 REVERSE LENGTH=1299