MLOC_11743 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.886214.357883.513563.95234
LEAShoots from the seedlings (10 cm shoot stage)2.99581.617241.895051.8524
INF1Young developing inflorescences (5mm)7.626556.880236.435925.93788
INF2Developing inflorescences (1-1.5 cm)5.615345.586875.72736.07369
ROORoots from the seedlings (10 cm shoot stage)3.605383.826283.157954.38385
NODDeveloping tillers at six leaf stage, 3rd internode0.6438030.7897651.218132.91166
CAR5Developing grain, bracts removed (5 DPA)6.384476.523726.163186.1204
CAR15Developing grain, bracts removed (15 DPA)4.52155.143713.4622710.46



CDS Structure of MLOC_11743






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11743.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376796NoneNoneNoneNone
MLOC_11743.1CUST_1056_PI427708080AvailableAvailablecontig_1561744 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g03530.1 +2 0.0 655 316/400 (79%) 13102.m00338 protein PPR repeat domain containing protein, putative, expressed
TAIR PP10 AT1G71210.1 +2 3e-63 229 135/337 (40%) Pentatricopeptide repeat (PPR) superfamily protein | chr1:26838850-26841489 REVERSE LENGTH=879