- Predicted Gene MLOC_11743
MLOC_11743 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 3.88621 | 4.35788 | 3.51356 | 3.95234 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 2.9958 | 1.61724 | 1.89505 | 1.8524 |
INF1 | Young developing inflorescences (5mm) | 7.62655 | 6.88023 | 6.43592 | 5.93788 |
INF2 | Developing inflorescences (1-1.5 cm) | 5.61534 | 5.58687 | 5.7273 | 6.07369 |
ROO | Roots from the seedlings (10 cm shoot stage) | 3.60538 | 3.82628 | 3.15795 | 4.38385 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.643803 | 0.789765 | 1.21813 | 2.91166 |
CAR5 | Developing grain, bracts removed (5 DPA) | 6.38447 | 6.52372 | 6.16318 | 6.1204 |
CAR15 | Developing grain, bracts removed (15 DPA) | 4.5215 | 5.14371 | 3.46227 | 10.46 |
CDS Structure of MLOC_11743
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_11743.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g03530.1 |
+2 |
0.0 |
655 |
316/400 (79%) |
13102.m00338 protein PPR repeat domain containing protein, putative, expressed |
TAIR PP10 |
AT1G71210.1 |
+2 |
3e-63 |
229 |
135/337 (40%) |
Pentatricopeptide repeat (PPR) superfamily protein | chr1:26838850-26841489 REVERSE LENGTH=879 |