MLOC_11701 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.9908411.879310.28119.69802
LEAShoots from the seedlings (10 cm shoot stage)14.525313.938210.702711.4351
INF1Young developing inflorescences (5mm)22.854322.912324.923119.0455
INF2Developing inflorescences (1-1.5 cm)34.491733.481731.245135.6082
ROORoots from the seedlings (10 cm shoot stage)4.683678.651096.533919.92484
NODDeveloping tillers at six leaf stage, 3rd internode9.8357811.871112.462142.8087
CAR5Developing grain, bracts removed (5 DPA)19.387917.947620.781918.2211
CAR15Developing grain, bracts removed (15 DPA)7.238027.266157.6288215.932



CDS Structure of MLOC_11701






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11701.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK361784NoneNoneNoneNone
MLOC_11701.2CUST_1053_PI427708080AvailableAvailablecontig_1561672 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g10700.1 -3 0.0 1299 796/1316 (60%) 13112.m01134 protein expressed protein
TAIR PP10 AT4G10930.1 -3 3e-120 405 311/836 (37%) unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:6705178-6708846 REVERSE LENGTH=984