MLOC_11592 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.39632.893024.980093.01385
LEAShoots from the seedlings (10 cm shoot stage)4.421334.916182.557752.98036
INF1Young developing inflorescences (5mm)25.228821.648523.247516.6936
INF2Developing inflorescences (1-1.5 cm)25.651525.208122.607423.6937
ROORoots from the seedlings (10 cm shoot stage)2.558874.569982.843134.15945
NODDeveloping tillers at six leaf stage, 3rd internode2.496931.654642.036694.73346
CAR5Developing grain, bracts removed (5 DPA)7.887128.501398.377636.93495
CAR15Developing grain, bracts removed (15 DPA)2.261592.357762.830424.76558



CDS Structure of MLOC_11592






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11592.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_11592.1CUST_1789_PI427708083AvailableAvailablecontig_1561416 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g49990.2 +1 4e-72 225 130/152 (86%) 13104.m05113 protein AT hook motif domain containing protein, expressed
TAIR PP10 AT2G33620.4 +1 2e-39 138 80/142 (56%) AT hook motif DNA-binding family protein | chr2:14234749-14236563 FORWARD LENGTH=351