MLOC_11569 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains56.989757.806660.459762.8429
LEAShoots from the seedlings (10 cm shoot stage)46.100822.375332.085730.2095
INF1Young developing inflorescences (5mm)43.351242.588242.695538.4771
INF2Developing inflorescences (1-1.5 cm)32.255638.77742.568244.4699
ROORoots from the seedlings (10 cm shoot stage)36.0843.275744.529655.8081
NODDeveloping tillers at six leaf stage, 3rd internode51.49642.063124.4892140.863
CAR5Developing grain, bracts removed (5 DPA)43.480339.126435.95542.4775
CAR15Developing grain, bracts removed (15 DPA)12.020211.954811.090529.0936



CDS Structure of MLOC_11569






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11569.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251952.1NoneNoneNoneNone
MLOC_11569.1CUST_1042_PI427708080AvailableAvailablecontig_1561363 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g46620.1 +2 0.0 536 280/338 (83%) 13105.m04981 protein chaperone protein dnaJ 10, putative, expressed
TAIR PP10 AT4G39150.2 +2 5e-144 422 217/328 (66%) DNAJ heat shock N-terminal domain-containing protein | chr4:18233651-18235740 REVERSE LENGTH=345