MLOC_11560 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.67113.799613.365513.1809
LEAShoots from the seedlings (10 cm shoot stage)5.927991.313942.252332.77718
INF1Young developing inflorescences (5mm)12.134113.033314.135710.9858
INF2Developing inflorescences (1-1.5 cm)12.025514.872615.702314.9265
ROORoots from the seedlings (10 cm shoot stage)8.6511512.992711.942614.5804
NODDeveloping tillers at six leaf stage, 3rd internode1.13451.483880.2358184.08343
CAR5Developing grain, bracts removed (5 DPA)2.706592.598962.243072.40228
CAR15Developing grain, bracts removed (15 DPA)0.8994190.400851.091991.73822



CDS Structure of MLOC_11560






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11560.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369077NoneNoneNoneNone
MLOC_11560.1CUST_1037_PI427708080AvailableAvailablecontig_1561348 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g07912.1 +2 0.0 746 408/497 (82%) 13111.m00829 protein MLO domain containing protein, putative, expressed
TAIR PP10 AT1G11000.1 +2 0.0 558 300/489 (61%) | Symbols: MLO4, ATMLO4 | Seven transmembrane MLO family protein | chr1:3671935-3675909 REVERSE LENGTH=573