MLOC_11544 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.456224.769795.051965.27428
LEAShoots from the seedlings (10 cm shoot stage)2.071231.555190.988211.31552
INF1Young developing inflorescences (5mm)5.964297.461987.024886.5099
INF2Developing inflorescences (1-1.5 cm)4.012985.058474.519535.3284
ROORoots from the seedlings (10 cm shoot stage)17.441614.514412.111917.6199
NODDeveloping tillers at six leaf stage, 3rd internode2.209023.321671.569759.07511
CAR5Developing grain, bracts removed (5 DPA)4.098356.438025.783365.71059
CAR15Developing grain, bracts removed (15 DPA)0.9473770.8793580.9529652.3963



CDS Structure of MLOC_11544






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11544.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374027NoneNoneNoneNone
MLOC_11544.2CUST_1033_PI427708080AvailableAvailablecontig_1561310 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g01510.1 +3 8e-163 468 249/308 (81%) 13104.m00062 protein DUF1295 domain containing protein, putative, expressed
TAIR PP10 AT2G46890.1 +3 2e-138 404 201/319 (63%) Protein of unknown function (DUF1295) | chr2:19266879-19268134 REVERSE LENGTH=322