MLOC_11530 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.564620.182719.361117.6006
LEAShoots from the seedlings (10 cm shoot stage)22.669414.214113.909614.4969
INF1Young developing inflorescences (5mm)20.42317.039718.329914.9221
INF2Developing inflorescences (1-1.5 cm)20.673221.559220.693321.8238
ROORoots from the seedlings (10 cm shoot stage)18.167520.968819.03223.8294
NODDeveloping tillers at six leaf stage, 3rd internode21.69620.198318.505464.9821
CAR5Developing grain, bracts removed (5 DPA)25.595524.036125.797622.8362
CAR15Developing grain, bracts removed (15 DPA)8.624128.185497.9322917.6796



CDS Structure of MLOC_11530






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11530.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_11530.1CUST_8803_PI427708080AvailableAvailablecontig_1561294 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g38110.1 -2 0.0 1525 810/872 (93%) 13112.m03924 protein importin subunit beta, putative, expressed
TAIR PP10 AT5G53480.1 -2 0.0 1316 687/871 (79%) ARM repeat superfamily protein | chr5:21714016-21716709 FORWARD LENGTH=870