MLOC_11525 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.276392.234842.210081.61009
LEAShoots from the seedlings (10 cm shoot stage)2.710943.189141.948261.89467
INF1Young developing inflorescences (5mm)2.90233.028874.297062.38307
INF2Developing inflorescences (1-1.5 cm)2.542322.358422.107732.3381
ROORoots from the seedlings (10 cm shoot stage)0.5152051.300121.078671.11429
NODDeveloping tillers at six leaf stage, 3rd internode5.187962.636322.179276.79151
CAR5Developing grain, bracts removed (5 DPA)2.720624.271842.766862.7374
CAR15Developing grain, bracts removed (15 DPA)1.358340.8346260.6775542.21336



CDS Structure of MLOC_11525






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11525.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_11525.1CUST_1777_PI427708083AvailableAvailablecontig_1561284 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g25440.1 +2 7e-33 129 61/79 (77%) 13101.m02694 protein thiamin pyrophosphokinase 1, putative, expressed
TAIR PP10 AT2G44750.1 +2 3e-16 80 38/66 (58%) | Symbols: TPK2 | thiamin pyrophosphokinase 2 | chr2:18451510-18452754 FORWARD LENGTH=265