MLOC_11517 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.03076810.1018160.1464220.0922384
LEAShoots from the seedlings (10 cm shoot stage)0.3037480.3836410.2258920.24664
INF1Young developing inflorescences (5mm)0.1362190.09962160.1435020.103833
INF2Developing inflorescences (1-1.5 cm)0.2978960.1021270.1949180.203312
ROORoots from the seedlings (10 cm shoot stage)0.05454680.1529740.07929760.139186
NODDeveloping tillers at six leaf stage, 3rd internode0.04148860.05342860.06449090.149016
CAR5Developing grain, bracts removed (5 DPA)0.2678720.1513430.2510030.197743
CAR15Developing grain, bracts removed (15 DPA)0.3091320.1039410.2076490.496779



CDS Structure of MLOC_11517






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11517.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_11517.4CUST_8799_PI427708080AvailableAvailablecontig_1561275 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g42880.1 +1 1e-47 112 49/111 (44%) 13110.m04052 protein retrotransposon protein, putative, unclassified
TAIR PP10None-----