MLOC_11500 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.263182.244712.027581.85898
LEAShoots from the seedlings (10 cm shoot stage)1.283622.488442.380041.48161
INF1Young developing inflorescences (5mm)3.296114.149734.107442.62381
INF2Developing inflorescences (1-1.5 cm)3.805783.989454.484873.78132
ROORoots from the seedlings (10 cm shoot stage)1.818792.040242.326872.13986
NODDeveloping tillers at six leaf stage, 3rd internode0.08055760.3434610.5174651.19016
CAR5Developing grain, bracts removed (5 DPA)1.162621.643131.330851.12851
CAR15Developing grain, bracts removed (15 DPA)1.271810.9611941.268262.15451



CDS Structure of MLOC_11500






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11500.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376406NoneNoneNoneNone
MLOC_11500.1CUST_1027_PI427708080AvailableAvailablecontig_1561244 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g22870.1 -1 8e-60 206 118/148 (80%) 13104.m02123 protein rpp14 family protein, expressed
TAIR PP10 AT1G04635.1 -1 2e-44 155 73/110 (66%) | Symbols: EMB1687 | ribonuclease P family protein / Rpp14 family protein | chr1:1291350-1291805 FORWARD LENGTH=151