MLOC_11453 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.013714.833914.366715.19927
LEAShoots from the seedlings (10 cm shoot stage)0.6915740.535360.7978550.576277
INF1Young developing inflorescences (5mm)0.04645250.0531640.0867690.0670495
INF2Developing inflorescences (1-1.5 cm)000.05762490.0831276
ROORoots from the seedlings (10 cm shoot stage)5.535213.616443.88574.58533
NODDeveloping tillers at six leaf stage, 3rd internode0.4049780.395180.531411.20389
CAR5Developing grain, bracts removed (5 DPA)0.0283884000.0259743
CAR15Developing grain, bracts removed (15 DPA)0.1267310.07290420.1229550.285339



CDS Structure of MLOC_11453






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11453.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_11453.1CUST_8791_PI427708080AvailableAvailablecontig_1561153 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g43590.2 -3 7e-105 322 217/346 (63%) 13101.m04508 protein HSF-type DNA-binding domain containing protein, expressed
TAIR PP10 AT3G24520.1 -3 1e-47 170 92/202 (46%) | Symbols: AT-HSFC1, HSFC1 | heat shock transcription factor C1 | chr3:8941455-8942531 FORWARD LENGTH=330