MLOC_11420 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.21596.602097.040957.62157
LEAShoots from the seedlings (10 cm shoot stage)8.183132.445294.991774.61494
INF1Young developing inflorescences (5mm)22.493623.228429.935121.6674
INF2Developing inflorescences (1-1.5 cm)30.026230.848933.104334.0749
ROORoots from the seedlings (10 cm shoot stage)10.88429.073348.1916910.8749
NODDeveloping tillers at six leaf stage, 3rd internode3.973627.0736912.104826.2326
CAR5Developing grain, bracts removed (5 DPA)7.274947.132599.171827.48644
CAR15Developing grain, bracts removed (15 DPA)7.918297.54538.9441418.3793



CDS Structure of MLOC_11420






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11420.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_11420.1CUST_1762_PI427708083AvailableAvailablecontig_1561044 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g10080.1 +1 3e-158 455 227/283 (80%) 13102.m01114 protein zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
TAIR PP10 AT3G12130.1 +1 6e-68 220 131/280 (47%) KH domain-containing protein / zinc finger (CCCH type) family protein | chr3:3864486-3866406 REVERSE LENGTH=248