MLOC_11417 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.455562.574793.571133.15042
LEAShoots from the seedlings (10 cm shoot stage)4.4771.766872.275862.45554
INF1Young developing inflorescences (5mm)0.7843472.19291.221051.2915
INF2Developing inflorescences (1-1.5 cm)2.024831.862171.461312.07828
ROORoots from the seedlings (10 cm shoot stage)2.741923.976143.200814.49769
NODDeveloping tillers at six leaf stage, 3rd internode9.170845.753641.3803516.7211
CAR5Developing grain, bracts removed (5 DPA)2.593762.498873.49182.86328
CAR15Developing grain, bracts removed (15 DPA)0.1419330.05154490.1382610.270976



CDS Structure of MLOC_11417






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11417.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374851NoneNoneNoneNone
MLOC_11417.1CUST_92_PI427708083AvailableAvailablecontig_1561038 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g61810.1 -1 7e-105 309 150/185 (81%) 13103.m06812 protein tRNA-specific adenosine deaminase, putative, expressed
TAIR PP10 AT5G28050.1 -1 4e-96 286 140/185 (76%) Cytidine/deoxycytidylate deaminase family protein | chr5:10044209-10045755 REVERSE LENGTH=185