MLOC_11412 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.90267.771417.793487.25122
LEAShoots from the seedlings (10 cm shoot stage)2.7416.558733.84314.5241
INF1Young developing inflorescences (5mm)0.2361850.218540.1234320.173508
INF2Developing inflorescences (1-1.5 cm)0.8730621.353791.399591.30164
ROORoots from the seedlings (10 cm shoot stage)10.537812.562912.661913.6175
NODDeveloping tillers at six leaf stage, 3rd internode6.264929.333576.4822526.0729
CAR5Developing grain, bracts removed (5 DPA)4.678354.088684.474964.21651
CAR15Developing grain, bracts removed (15 DPA)1.241931.381861.621893.27141



CDS Structure of MLOC_11412






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11412.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376092NoneNoneNoneNone
MLOC_11412.2CUST_1017_PI427708080AvailableAvailablecontig_1561034 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g30490.1 +3 0.0 700 383/478 (80%) 13104.m02894 protein MATE efflux family protein, putative, expressed
TAIR PP10 AT5G52450.1 +3 6e-170 501 290/468 (62%) MATE efflux family protein | chr5:21289042-21291749 REVERSE LENGTH=486