MLOC_11338 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.326861.887651.922151.98808
LEAShoots from the seedlings (10 cm shoot stage)0.5140960.4482690.5335870.440239
INF1Young developing inflorescences (5mm)0.8761131.25551.083440.886943
INF2Developing inflorescences (1-1.5 cm)2.09912.265592.502882.37759
ROORoots from the seedlings (10 cm shoot stage)2.882521.309131.384991.87506
NODDeveloping tillers at six leaf stage, 3rd internode0.8601821.587052.244465.95994
CAR5Developing grain, bracts removed (5 DPA)7.916147.646087.511897.12495
CAR15Developing grain, bracts removed (15 DPA)11.163910.37757.8800522.316



CDS Structure of MLOC_11338






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11338.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374673NoneNoneNoneNone
MLOC_11338.3CUST_1012_PI427708080AvailableAvailablecontig_1560856 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g28690.2 +1 7e-97 314 164/297 (55%) 13101.m02986 protein nucleoporin autopeptidase domain containing protein, expressed
TAIR PP10 AT1G10390.2 +1 7e-57 208 96/158 (61%) Nucleoporin autopeptidase | chr1:3407265-3412045 REVERSE LENGTH=1041