MLOC_11295 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.6774812.267911.56098.82885
LEAShoots from the seedlings (10 cm shoot stage)13.338911.230310.64879.49423
INF1Young developing inflorescences (5mm)21.658219.519520.592715.1717
INF2Developing inflorescences (1-1.5 cm)24.047624.145225.008923.6702
ROORoots from the seedlings (10 cm shoot stage)4.4060611.33028.8522410.8458
NODDeveloping tillers at six leaf stage, 3rd internode3.871056.442146.5015520.7315
CAR5Developing grain, bracts removed (5 DPA)16.807714.777316.563213.5861
CAR15Developing grain, bracts removed (15 DPA)8.145227.520437.0315315.0895



CDS Structure of MLOC_11295






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11295.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364935NoneNoneNoneNone
MLOC_11295.1CUST_17899_PI427708080AvailableAvailablecontig_1560776 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g37890.1 +1 0.0 2066 1124/1642 (68%) 13112.m03901 protein expressed protein
TAIR PP10 AT2G39580.1 +1 6e-120 419 280/819 (34%) CONTAINS InterPro DOMAIN/s: Putative zinc-finger domain (InterPro:IPR019607); Has 249 Blast hits to 219 proteins in 85 species: Archae - 0; Bacteria - 144; Metazoa - 29; Fungi - 8; Plants - 50; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). | chr2:16510540-16516948 FORWARD LENGTH=1577