MLOC_11287 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains58.419464.850362.694355.8796
LEAShoots from the seedlings (10 cm shoot stage)63.453460.532254.67747.2124
INF1Young developing inflorescences (5mm)103.005116.13116.15980.051
INF2Developing inflorescences (1-1.5 cm)100.084106.77299.2066100.23
ROORoots from the seedlings (10 cm shoot stage)70.516979.714970.333184.781
NODDeveloping tillers at six leaf stage, 3rd internode80.407169.656671.1398230.72
CAR5Developing grain, bracts removed (5 DPA)59.531557.663163.65951.0304
CAR15Developing grain, bracts removed (15 DPA)23.18920.314624.009642.9718



CDS Structure of MLOC_11287






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11287.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_11287.2CUST_8766_PI427708080AvailableAvailablecontig_1560752 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g45420.3 -2 0.0 817 408/448 (91%) 13105.m04826 protein CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
TAIR PP10 AT3G01090.3 -2 0.0 712 353/450 (78%) | Symbols: AKIN10, KIN10 | SNF1 kinase homolog 10 | chr3:31437-33977 REVERSE LENGTH=512