MLOC_11274 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4005580.6032770.3525180.463973
LEAShoots from the seedlings (10 cm shoot stage)0.2817350.452980.4403140.300257
INF1Young developing inflorescences (5mm)1.260231.210271.093380.98666
INF2Developing inflorescences (1-1.5 cm)1.065820.9548340.8168141.03343
ROORoots from the seedlings (10 cm shoot stage)0.6862020.5824790.9840160.694163
NODDeveloping tillers at six leaf stage, 3rd internode0.1953230.06549560.3723740.351347
CAR5Developing grain, bracts removed (5 DPA)0.8768830.7334310.7100110.727523
CAR15Developing grain, bracts removed (15 DPA)0.1390480.1377950.157620.323608



CDS Structure of MLOC_11274






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11274.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376078NoneNoneNoneNone
MLOC_11274.1CUST_1005_PI427708080AvailableAvailablecontig_1560734 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g39650.1 -2 0.0 869 421/520 (81%) 13106.m04112 protein pentatricopeptide, putative, expressed
TAIR PP10 AT1G31430.1 -2 2e-144 453 228/515 (44%) Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:11254025-11255737 REVERSE LENGTH=570