MLOC_11262 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.1673318.989812.198217.261
LEAShoots from the seedlings (10 cm shoot stage)44.179629.586117.996931.3139
INF1Young developing inflorescences (5mm)1.773350.5511350.7595090.947228
INF2Developing inflorescences (1-1.5 cm)2.806653.353042.886683.88804
ROORoots from the seedlings (10 cm shoot stage)30.83877.4497112.763619.0905
NODDeveloping tillers at six leaf stage, 3rd internode34.785469.042324.5971293.488
CAR5Developing grain, bracts removed (5 DPA)24.790522.490328.274428.555
CAR15Developing grain, bracts removed (15 DPA)15.940313.623213.346836.8901



CDS Structure of MLOC_11262






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11262.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_11262.3CUST_8759_PI427708080AvailableAvailablecontig_1560717 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g03840.2 -3 0.0 1023 947/3112 (30%) 13102.m12354 protein expressed protein
TAIR PP10 AT5G40450.1 -3 7e-68 257 651/3128 (21%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16184799-16195513 REVERSE LENGTH=2889