MLOC_11261 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.682420.879517.229419.4486
LEAShoots from the seedlings (10 cm shoot stage)50.047136.067627.808136.1421
INF1Young developing inflorescences (5mm)2.270331.264151.397471.41445
INF2Developing inflorescences (1-1.5 cm)2.495053.566923.645193.79203
ROORoots from the seedlings (10 cm shoot stage)37.781213.761620.459326.755
NODDeveloping tillers at six leaf stage, 3rd internode108.08154.78118.086573.713
CAR5Developing grain, bracts removed (5 DPA)25.032327.160929.846128.9697
CAR15Developing grain, bracts removed (15 DPA)17.900215.439314.622637.9768



CDS Structure of MLOC_11261






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11261.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366335NoneNoneNoneNone
MLOC_11261.1CUST_1003_PI427708080AvailableAvailablecontig_1560717 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g03840.2 -2 2e-139 466 285/542 (53%) 13102.m12354 protein expressed protein
TAIR PP10 AT2G22795.1 -2 1e-18 91 134/617 (22%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1); Has 799854 Blast hits to 188815 proteins in 4452 species: Archae - 4529; Bacteria - 144236; Metazoa - 287749; Fungi - 87083; Plants - 43826; Viruses - 3662; Other Eukaryotes - 228769 (source: NCBI BLink). | chr2:9697380-9699584 REVERSE LENGTH=734