MLOC_11260 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.8320217.940616.98712.9737
LEAShoots from the seedlings (10 cm shoot stage)17.201417.996318.298113.394
INF1Young developing inflorescences (5mm)28.672628.873331.033120.5425
INF2Developing inflorescences (1-1.5 cm)29.808736.211530.147129.7884
ROORoots from the seedlings (10 cm shoot stage)12.096716.577112.296315.7608
NODDeveloping tillers at six leaf stage, 3rd internode8.136188.376728.2086424.1455
CAR5Developing grain, bracts removed (5 DPA)33.543232.162334.739126.285
CAR15Developing grain, bracts removed (15 DPA)19.095317.523715.526733.3722



CDS Structure of MLOC_11260






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11260.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_11260.1CUST_8758_PI427708080AvailableAvailablecontig_1560713 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g52594.3 +1 0.0 693 420/625 (67%) 13103.m05726 protein CCR4-NOT transcription factor, putative, expressed
TAIR PP10 AT5G59710.1 +1 2e-157 493 323/591 (55%) | Symbols: VIP2, AtVIP2 | VIRE2 interacting protein 2 | chr5:24058157-24061736 FORWARD LENGTH=614