MLOC_11254 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.04473950.05354660.06017580.0575516
LEAShoots from the seedlings (10 cm shoot stage)0.4041540.2005440.1516910.223711
INF1Young developing inflorescences (5mm)0.06425880.08063770.08105120.0644532
INF2Developing inflorescences (1-1.5 cm)0.08109590.06454260.1234180.0947442
ROORoots from the seedlings (10 cm shoot stage)0.3701590.7759430.8525350.894717
NODDeveloping tillers at six leaf stage, 3rd internode0.442270.8685941.443423.1868
CAR5Developing grain, bracts removed (5 DPA)0.0694340.07681310.06007080.0684983
CAR15Developing grain, bracts removed (15 DPA)0.02738610.0580130.06051250.103535



CDS Structure of MLOC_11254






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11254.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_11254.1CUST_8756_PI427708080AvailableAvailablecontig_1560699 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g27430.1 -3 0.0 650 447/974 (46%) 13111.m02628 protein NB-ARC domain containing protein
TAIR PP10 AT3G46530.1 -3 7e-36 147 210/886 (24%) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835