MLOC_11173 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8999062.845651.757421.36899
LEAShoots from the seedlings (10 cm shoot stage)4.34251.645081.446351.82979
INF1Young developing inflorescences (5mm)2.629181.922682.202541.37177
INF2Developing inflorescences (1-1.5 cm)1.94891.856883.0281.21543
ROORoots from the seedlings (10 cm shoot stage)0.3464881.315272.425871.01019
NODDeveloping tillers at six leaf stage, 3rd internode1.334991.424991.655045.46462
CAR5Developing grain, bracts removed (5 DPA)5.021743.770943.964772.0177
CAR15Developing grain, bracts removed (15 DPA)1.569380.990820.6544721.75282



CDS Structure of MLOC_11173






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11173.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_11173.1CUST_1734_PI427708083AvailableAvailablecontig_1560561 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g29630.1 +1 4e-35 103 47/72 (65%) 13102.m03231 protein retrotransposon protein, putative, unclassified
TAIR PP10 AT5G24690.1 -3 7e-12 69 38/69 (55%) Protein of unknown function (DUF3411) | chr5:8455783-8458513 REVERSE LENGTH=521