MLOC_11172 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains72.290552.885651.401757.139
LEAShoots from the seedlings (10 cm shoot stage)34.017521.504130.891323.2124
INF1Young developing inflorescences (5mm)20.718520.502819.446317.4598
INF2Developing inflorescences (1-1.5 cm)16.374917.041318.185619.0943
ROORoots from the seedlings (10 cm shoot stage)59.906456.477940.509461.7313
NODDeveloping tillers at six leaf stage, 3rd internode49.726352.866633.7646138.191
CAR5Developing grain, bracts removed (5 DPA)53.662151.547452.641552.3412
CAR15Developing grain, bracts removed (15 DPA)14.0415.245214.394935.9119



CDS Structure of MLOC_11172






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11172.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364705NoneNoneNoneNone
MLOC_11172.2CUST_990_PI427708080AvailableAvailablecontig_1560558 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g42480.1 -1 8e-175 495 264/292 (90%) 13101.m04361 protein Yip1 domain containing protein, expressed
TAIR PP10 AT5G27490.1 -1 1e-134 392 203/290 (70%) Integral membrane Yip1 family protein | chr5:9703130-9704653 REVERSE LENGTH=282