MLOC_11163 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.397917.79118.448617.8112
LEAShoots from the seedlings (10 cm shoot stage)7.269913.074932.221273.69632
INF1Young developing inflorescences (5mm)26.058333.954539.706826.4159
INF2Developing inflorescences (1-1.5 cm)36.166435.110636.179338.2297
ROORoots from the seedlings (10 cm shoot stage)5.934410.010911.258511.5267
NODDeveloping tillers at six leaf stage, 3rd internode22.688820.490427.113572.3144
CAR5Developing grain, bracts removed (5 DPA)5.400296.258685.694895.60698
CAR15Developing grain, bracts removed (15 DPA)1.265330.9551471.912262.77599



CDS Structure of MLOC_11163






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11163.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370722NoneNoneNoneNone
MLOC_11163.3CUST_17895_PI427708080AvailableAvailablecontig_1560268 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g48260.1 +3 1e-109 333 190/252 (75%) 13104.m04909 protein zinc RING finger protein, putative, expressed
TAIR PP10 AT3G63530.2 +3 2e-34 132 60/108 (56%) | Symbols: BB, BB2 | RING/U-box superfamily protein | chr3:23456407-23457787 REVERSE LENGTH=248