MLOC_11128 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2917840.4705210.1628640.368447
LEAShoots from the seedlings (10 cm shoot stage)0.19650.0982130.2288070.162287
INF1Young developing inflorescences (5mm)3.110023.546484.142722.80476
INF2Developing inflorescences (1-1.5 cm)3.528463.748293.103143.86114
ROORoots from the seedlings (10 cm shoot stage)00.1659140.3765050.303318
NODDeveloping tillers at six leaf stage, 3rd internode0.05025380.1639390.3624110.716573
CAR5Developing grain, bracts removed (5 DPA)0.2506070.1802070.1148120.178235
CAR15Developing grain, bracts removed (15 DPA)0.0576261000.217439



CDS Structure of MLOC_11128






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11128.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_11128.1CUST_1726_PI427708083AvailableAvailablecontig_1560448 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g41490.1 +1 2e-129 406 214/270 (79%) 13104.m04071 protein DNA-directed RNA polymerase III subunit RPC1, putative, expressed
TAIR PP10 AT5G60040.1 +1 5e-77 259 141/273 (52%) | Symbols: NRPC1 | nuclear RNA polymerase C1 | chr5:24173590-24183269 FORWARD LENGTH=1376