MLOC_11123 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains22.542913.553916.050914.9396
LEAShoots from the seedlings (10 cm shoot stage)6.989120.6021192.0252.83101
INF1Young developing inflorescences (5mm)29.702435.678338.631924.6794
INF2Developing inflorescences (1-1.5 cm)25.394530.637126.630727.2238
ROORoots from the seedlings (10 cm shoot stage)8.8792611.180511.532411.2187
NODDeveloping tillers at six leaf stage, 3rd internode3.377113.54033.6695210.519
CAR5Developing grain, bracts removed (5 DPA)15.325517.826117.355714.1747
CAR15Developing grain, bracts removed (15 DPA)1.466761.600652.899283.49213



CDS Structure of MLOC_11123






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11123.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_11123.1NoneAvailableAvailablecontig_1560433 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g08790.1 +1 6e-63 214 98/106 (92%) 13106.m00925 protein ORC1 - Putative origin recognition complex subunit 1, expressed
TAIR PP10 AT4G12620.1 +1 6e-37 140 65/106 (61%) | Symbols: ORC1B, ATORC1B, UNE13 | origin of replication complex 1B | chr4:7459812-7462253 REVERSE LENGTH=813